Publication List – University of Copenhagen

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Ober Lab - List of publications

Lonowski, Lindsey A., Yoshiki Narimatsu, Anjum Riaz, Catherine E. Delay, Zhang Yang, Francesco Niola, Katarzyna Duda, Elke A. Ober, Henrik Clausen, Hans H. Wandall, Steen H. Hansen, Eric P. Bennett & Morten Frödin (2017). Genome editing using FACS enrichment of nuclease-expressing cells and indel detection by amplicon analysis. Nature Protocols, 12(3), 581-603, doi:10.1038/nprot.2016.165.

Wang, Shuang, Sophie R. Miller, Elke A. Ober, Kirsten C. Sadler (2017). Making it new again: Insight into liver development, regeneration, and disease from zebrafish research. Current topics in developmental Biology, 124, 161-195, doi: 10.1016/bs.ctdb.2016.11.012.

Cayuso, Jordi, Aliaksandr Dzementsei, Johanna C. Fischer, Gopal Karemore, Sara Caviglia, Josefin Bartholdson, Gavin J. Wright & Elke A. Ober (2016). EphrinB1/EphB3b Coordinate Bidirectional Epithelial-Mesenchymal Interactions Controlling Liver Morphogenesis and Laterality. Developmental Cell, 39(3), 316-328, doi:10.1016/j.devcel.2016.10.009. Recommended by the faculty of 1000.

Koltowska, Katarzyna, Anne Karine Lagendijk, Cathy Pichol-Thievend, Johanna C Fischer, Mathias Francois, Elke A. Ober, Alpha S Yap & Benjamin M Hogan (2015). Vegfc Regulates Bipotential Precursor Division and Prox1 Expression to Promote Lymphatic Identity in Zebrafish. Cell Reports, 13(9), 1828-1841, doi:10.1016/j.celrep.2015.10.055.

Ober, Elke A. & Anne Grapin-Botton (2015). At new heights - endodermal lineages in development and disease. Development, 142(11), 1912-1917, doi:10.1242/dev.121095.

Dunworth, William P., Jose Cardona-Costa, Esra Cagavi Bozkulak, Jun-Dae Kim, Stryder Meadows, Johanna C. Fischer, Yeqi Wang, Ondine Cleaver, Yibing Qyang, Elke A. Ober & Suk-Won Jin (2014). Bone Morphogenetic Protein 2 Signaling Negatively Modulates Lymphatic Development in Vertebrate Embryos. Circulation Research, 114(1), 56-66, doi:10.1161/circresaha.114.302452.

van Impel, Andreas, Zhonghua Zhao, Dorien M. A. Hermkens, M. Guy Roukens, Johanna C. Fischer, Josi Peterson-Maduro, Henricus Duckers, Elke A. Ober, Philip W. Ingham & Stefan Schulte-Merker (2014). Divergence of zebrafish and mouse lymphatic cell fate specification pathways. Development, 141(6), 1228-U1101, doi:10.1242/dev.105031.

Markmiller, Sebastian, Nicole Cloonan, Rea M. Lardelli, Karen Doggett, Maria-Cristina Keightley, Yeliz Boglev, Andrew J. Trotter, Annie Y. Ng, Simon J. Wilkins, Heather Verkade, Elke A. Ober, Holly A. Field, Sean M. Grimmond, Graham J. Lieschke, Didier Y. R. Stainier & Joan K. Heath (2014). Minor class splicing shapes the zebrafish transcriptome during development. Proceedings of the National Academy of Sciences of the United States of America, 111(8), 3062-3067, doi:10.1073/pnas.1305536111.

Boglev, Yeliz, Andrew P. Badrock, Andrew J. Trotter, Qian Du, Elsbeth J. Richardson, Adam C. Parslow, Sebastian J. Markmiller, Nathan E. Hall, Tanya A. de Jong-Curtain, Annie Y. Ng, Heather Verkade, Elke A. Ober, Holly A. Field, Donghun H. Shin, Chong H. Shin, Katherine M. Hannan, Ross D. Hannan, Richard B. Pearson, Seok-Hyung H. Kim, Kevin C. Ess, Graham J. Lieschke, Didier Y. R. Stainier & Joan K. Heath (2013). Autophagy Induction Is a Tor- and Tp53-Independent Cell Survival Response in a Zebrafish Model of Disrupted Ribosome Biogenesis. Plos Genetics, 9(2), doi:10.1371/journal.pgen.1003279.

Koltowska, Katarzyna, Holger Apitz, Despina Stamataki, Elizabeth M. A. Hirst, Heather Verkade, Iris Salecker & Elke A. Ober (2013). Ssrp1a controls organogenesis by promoting cell cycle progression and RNA synthesis. Development, 140(9), 1912-1918, doi:10.1242/dev.093583.

Schaub, Madeleine, Justin Nussbaum, Heather Verkade, Elke A. Ober, Didier Y. R. Stainier & Takuya F. Sakaguchi (2012). Mutation of zebrafish Snapc4 is associated with loss of the intrahepatic biliary network. Developmental Biology, 363(1), 128-137, doi:10.1016/j.ydbio.2011.12.025.

Poulain, Morgane & Elke A. Ober (2011). Interplay between Wnt2 and Wnt2bb controls multiple steps of early foregut-derived organ development. Development, 138(16), 3557-3568, doi:10.1242/dev.055921.

Mas, J. C., E. S. Noel & E. A. Ober (2011). Chromatin Modification in Zebrafish Development. Zebrafish: Genetics, Genomics and Informatics, 3rd Edition. H. W. Detrich, M. Westerfield and L. I. Zon. San Diego, Elsevier Academic Press Inc. 104: 401-428.

Curado, Silvia, Elke A. Ober, Susan Walsh, Paulina Cortes-Hernandez, Heather Verkade, Carla M. Koehler & Didier Y. R. Stainier (2010). The mitochondrial import gene tomm22 is specifically required for hepatocyte survival and provides a liver regeneration model. Disease Models & Mechanisms, 3(7-8), 486-495, doi:10.1242/dmm.004390.

Noël, Emily S., Mario dos Reis, Zoya Arain & Elke A. Ober (2010). Analysis of the Albumin/alpha-Fetoprotein/Afamin/Group specific component gene family in the context of zebrafish liver differentiation. Gene Expression Patterns, 10(6), 237-243, doi:10.1016/j.gep.2010.05.002.

Munson, Chantilly, Jan Huisken, Nana Bit-Avragim, Taiyi Kuo, P. D. Dong, Elke A. Ober, Heather Verkade, Salim Abdelilah-Seyfried & Didier Y. R. Stainier (2008). Regulation of neurocoel morphogenesis by Pard6 gamma b. Developmental Biology, 324(1), 41-54, doi:10.1016/j.ydbio.2008.08.033.

Noël, Emily S., Antonio Casal-Sueiro, Elisabeth Busch-Nentwich, Heather Verkade, P. Duc Si Dong, Derek L. Stemple & Elke A. Ober (2008). Organ-specific requirements for Hdac1 in liver and pancreas formation. Developmental Biology, 322(2), 237-250, doi:10.1016/j.ydbio.2008.06.040. 

Osborne, Nick, Koroboshka Brand-Arzamendi, Elke A. Ober, Suk-Won Jin, Heather Verkade, Nathalia G. Holtzman, Deborah Yelon & D. Y. R. Stainier (2008). The Spinster Homolog, Two of Hearts, Is Required for Sphingosine 1-Phosphate Signaling in Zebrafish. Current Biology, 18(23), 1882-1888, doi:10.1016/j.cub.2008.10.061.

Shin, Chong Hyun, Won-Suk Chung, Sung-Kook Hong, Elke A. Ober, Heather Verkade, Holly A. Field, Jan Huisken & Didier Y. R. Stainier (2008). Multiple roles for Med12 in vertebrate endoderm development. Developmental Biology, 317(2), 467-479, doi:10.1016/j.ydbio.2008.02.031.

Shin, Donghun, Chong H. Shin, Jennifer Tucker, Elke A. Ober, Fabian Rentzsch, Kenneth D. Poss, Matthias Hammerschmidt, Mary C. Mullins & Didier Y. R. Stainier (2007). Bmp and Fgf signaling are essential for liver specification in zebrafish. Development, 134(11), 2041-2050, doi: 10.1242/dev.000281.

Geisler, Robert, Gerd-Jörg Rauch, Silke Geiger-Rudolph, Andrea Albrecht, Frauke van Bebber, Andrea Berger, Elisabeth Busch-Nentwich, Ralf Dahm, Marcus P. S. Dekens, Christopher Dooley, Alexandra F. Elli, Ines Gehring, Horst Geiger, Maria Geisler, Stefanie Glaser, Scott Holley, Matthias Huber, Andy Kerr, Anette Kirn, Martina Knirsch, Martina Konantz, Axel M. Kuchler, Florina Maderspacher, Stephan C. Neuhauss, Teresa Nicolson, Elke A. Ober, Elke Praeg, Russell Ray, Brit Rentzsch, Jens M. Rick, Eva Rief, Heike E. Schauerte, Carsten P. Schepp, Ulrike Schönberger, Helia B. Schonthaler, Christoph Seiler, Samuel Sidi, Christian Sollner, Anja Wehner, Christian Weiler & Christiane Nüsslein-Volhard (2007). Large-scale mapping of mutations affecting zebrafish development. Bmc Genomics, 89, doi:10.1186/1471-2164-8-11.

Jin, Suk-Won, Wiebke Herzog, Massimo M. Santoro, Tracy S. Mitchell, Julie Frantsve, Benno Jungblut, Dimitris Beis, Ian C. Scott, Leonard A. D'Amico, Elke A. Ober, Heather Verkade, Holly A. Field, Neil C. Chi, Ann M. Wehman, Herwig Baier & Didier Y. R. Stainier (2007). A transgene-assisted genetic screen identifies essential regulators of vascular development in vertebrate embryos. Developmental Biology, 307(1), 29-42, doi:10.1016/j.ydbio.2007.03.526.

Ober, Elke A., Heather Verkade, Holly A. Field & Didier Y. R. Stainier (2006). Mesodermal Wnt2b signalling positively regulates liver specification. Nature, 442(7103), 688-691, doi:10.1038/nature04888.

Beis, Dimitris, Thomas Bartman, Suk-Won Jin, Ian C. Scott, Leonard A. D'Amico, Elke A. Ober, Heather Verkade, Julie Frantsve, Holly A. Field, Ann Wehman, Herwig Baier, Alexandra Tallafuss, Laure Bally-Cuif, Jau-Nian Chen, Didier Y. R. Stainier & Benno Jungblut (2005). Genetic and cellular analyses of zebrafish atrioventricular cushion and valve development. Development, 132(18), 4193-4204, doi:10.1242/dev.01970.

Ober, Elke A.*, Birgitta Olofsson*, Taija Mäkinen, Suk-Won Jin, Wataru Shoji, Gou Y. Koh, Kari Alitalo & Didier Y. R. Stainier (2004). Vegfc is required for vascular development and endoderm morphogenesis in zebrafish. Embo Reports, 5(1), 78-84, doi:10.1038/sj.embor.7400047.

Loosli, Felix, Wendy Staub, Karin C. Finger-Baier, Elke A. Ober, Heather Verkade, Joachim Wittbrodt & Herwig Baier (2003). Loss of eyes in zebrafish caused by mutation of chokh/rx3. Embo Reports, 4(9), 894-899, doi:10.1038/sj.embor.embor919.

Field, Holly A., Elke A. Ober, T. Roeser & D. Y. R. Stainier (2003). Formation of the digestive system in zebrafish. I. Liver morphogenesis. Developmental Biology, 253(2), 279-290, doi:10.1016/s0012-1606(02)00017-9.

Ober, Elke A., Holly A. Field & Didier Y. R. Stainier (2003). From endoderm formation to liver and pancreas development in zebrafish. Mechanisms of Development, 120(1), 5-18, doi:10.1016/s0925-4773(02)00327-1.

Ober, Elke A. & Stefan Schulte-Merker (1999). Signals from the yolk cell induce mesoderm, neuroectoderm, the trunk organizer, and the notochord in zebrafish. Developmental Biology, 215(2), 167-181, doi:10.1006/dbio.1999.9455.

Münchberg, S. R.*, Elke A. Ober* & Herbert Steinbeisser (1999). Expression of the Ets transcription factors erm and pea3 in early zebrafish development. Mechanisms of Development, 88(2), 233-236, doi:10.1016/s0925-4773(99)00179-3.